# Brain Structure Segmentation on MRBrainS13

Source: [Brain Structure Segmentation on MRBrainS13](<https://www.sota2.com/research/sota/brain-structure-segmentation-on-mrbrains13>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-02-26T05:38:18.546Z

Evaluation of brain structure segmentation performance on the MRBrainS13 dataset, reporting metrics for specific tissue classes (CF, GM, WM) and an average score.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Brain Structure Segmentation |
| Dataset (including any stated split) | MRBrainS13 |
| Metric | CF Score |
| Unit | PERCENT |
| Direction | Higher is better |
| Results loaded | 17 of 17 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [CF Score](<https://www.sota2.com/research/sota/brain-structure-segmentation-on-mrbrains13.md?metric=CF%20Score>): Higher is better; unit: PERCENT.

- [GM Score](<https://www.sota2.com/research/sota/brain-structure-segmentation-on-mrbrains13.md?metric=GM%20Score>): Higher is better; unit: PERCENT.

- [WM Score](<https://www.sota2.com/research/sota/brain-structure-segmentation-on-mrbrains13.md?metric=WM%20Score>): Higher is better; unit: PERCENT.

- [Average Score](<https://www.sota2.com/research/sota/brain-structure-segmentation-on-mrbrains13.md?metric=Average%20Score>): Higher is better; unit: PERCENT.

## Recorded results

| Method | CF Score | Result date | Report paper |
| --- | --- | --- | --- |
| BrainMVP | 81.04 | Not recorded | 68fa77b91e209131cea74fab |
| M3AE | 78.23 | Not recorded | 68fa77b91e209131cea74fab |
| UniFormer | 77.66 | Not recorded | 68fa77b91e209131cea74fab |
| MG | 71.4 | Not recorded | 68fa77b91e209131cea74fab |
| DAE | 71.37 | Not recorded | 68fa77b91e209131cea74fab |
| M3AE | 71.32 | Not recorded | 68fa77b91e209131cea74fab |
| VoCo | 71.29 | Not recorded | 68fa77b91e209131cea74fab |
| UNET3D | 70.47 | Not recorded | 68fa77b91e209131cea74fab |
| Swin-UNETR | 70.35 | Not recorded | 68fa77b91e209131cea74fab |
| Swin-UNETR\* | 69.67 | Not recorded | 68fa77b91e209131cea74fab |
| GVSL | 69.34 | Not recorded | 68fa77b91e209131cea74fab |
| TransVW | 68.92 | Not recorded | 68fa77b91e209131cea74fab |
| BrainMVP | 68.88 | Not recorded | 68fa77b91e209131cea74fab |
| MAE3D | 68.3 | Not recorded | 68fa77b91e209131cea74fab |
| SimMIM | 68.11 | Not recorded | 68fa77b91e209131cea74fab |
| MoCov3 | 67.97 | Not recorded | 68fa77b91e209131cea74fab |
| UNETR | 67.55 | Not recorded | 68fa77b91e209131cea74fab |

### BrainMVP

CF Score: 81.04. Result ID: 699562d53badfaffe655851c.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Implementation](<https://github.com/openmedlab/BrainMVP>)

Recorded evaluation configuration: {"Modality":"MRI","Network":"UniFormer","Pre-training Strategy":"With Medical SSL"}. This record does not assert independent reproduction.

### M3AE

CF Score: 78.23. Result ID: 699562d53badfaffe655851a.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6eb31e209131cea4194e.md>)

Recorded evaluation configuration: {"Modality":"MRI","Network":"UniFormer","Pre-training Strategy":"With Medical SSL"}. This record does not assert independent reproduction.

### UniFormer

CF Score: 77.66. Result ID: 699562d53badfaffe655850e.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa755e1e209131cea678c1.md>)

[Implementation](<https://github.com/Sense-X/UniFormer>)

Recorded evaluation configuration: {"Pre-training Strategy":"From Scratch","Network":"UniFormer"}. This record does not assert independent reproduction.

### MG

CF Score: 71.4. Result ID: 699562d53badfaffe6558513.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa68ef1e209131cea1f0c6.md>)

Recorded evaluation configuration: {"Modality":"CXR, CT","Network":"UNET3D","Pre-training Strategy":"With Medical SSL"}. This record does not assert independent reproduction.

### DAE

CF Score: 71.37. Result ID: 699562d53badfaffe6558518.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa703b1e209131cea49c7c.md>)

Recorded evaluation configuration: {"Modality":"MRI","Network":"Swin-UNETR","Pre-training Strategy":"With Medical SSL"}. This record does not assert independent reproduction.

### M3AE

CF Score: 71.32. Result ID: 699562d53badfaffe6558519.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6eb31e209131cea4194e.md>)

Recorded evaluation configuration: {"Modality":"MRI","Network":"UNET3D","Pre-training Strategy":"With Medical SSL"}. This record does not assert independent reproduction.

### VoCo

CF Score: 71.29. Result ID: 699562d53badfaffe6558517.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa80131e209131cea9be5a.md>)

[Implementation](<https://github.com/Luffy03/VoCo>)

Recorded evaluation configuration: {"Modality":"MRI","Network":"Swin-UNETR","Pre-training Strategy":"With Medical SSL"}. This record does not assert independent reproduction.

### UNET3D

CF Score: 70.47. Result ID: 699562d53badfaffe655850d.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa61e11e209131ce9f653d.md>)

[Implementation](<http://lmb.informatik.uni-freiburg.de/people/ronneber/u-net>)

Recorded evaluation configuration: {"Pre-training Strategy":"From Scratch","Network":"UNET3D"}. This record does not assert independent reproduction.

### Swin-UNETR

CF Score: 70.35. Result ID: 699562d53badfaffe655850f.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6b831e209131cea2eb83.md>)

Recorded evaluation configuration: {"Pre-training Strategy":"From Scratch","Network":"Swin-UNETR"}. This record does not assert independent reproduction.

### Swin-UNETR\*

CF Score: 69.67. Result ID: 699562d53badfaffe6558516.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6c1a1e209131cea3234f.md>)

[Implementation](<https://monai.io/research/swin-unetr>)

Recorded evaluation configuration: {"Modality":"MRI","Network":"Swin-UNETR","Pre-training Strategy":"With Medical SSL"}. This record does not assert independent reproduction.

### GVSL

CF Score: 69.34. Result ID: 699562d53badfaffe6558515.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6ea91e209131cea41356.md>)

Recorded evaluation configuration: {"Modality":"CT","Network":"UNET3D","Pre-training Strategy":"With Medical SSL"}. This record does not assert independent reproduction.

### TransVW

CF Score: 68.92. Result ID: 699562d53badfaffe6558514.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa695a1e209131cea21bc3.md>)

[Implementation](<https://github.com/JLiangLab/TransVW>)

Recorded evaluation configuration: {"Modality":"CT","Network":"UNET3D","Pre-training Strategy":"With Medical SSL"}. This record does not assert independent reproduction.

### BrainMVP

CF Score: 68.88. Result ID: 699562d53badfaffe655851b.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Implementation](<https://github.com/openmedlab/BrainMVP>)

Recorded evaluation configuration: {"Modality":"MRI","Network":"UNET3D","Pre-training Strategy":"With Medical SSL"}. This record does not assert independent reproduction.

### MAE3D

CF Score: 68.3. Result ID: 699562d53badfaffe6558510.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f391e209131ce9e8626.md>)

Recorded evaluation configuration: {"Modality":"Natural","Network":"UNETR","Pre-training Strategy":"With General SSL"}. This record does not assert independent reproduction.

### SimMIM

CF Score: 68.11. Result ID: 699562d53badfaffe6558511.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6c5b1e209131cea33891.md>)

[Implementation](<https://github.com/microsoft/SimMIM>)

Recorded evaluation configuration: {"Modality":"Natural","Network":"UNETR","Pre-training Strategy":"With General SSL"}. This record does not assert independent reproduction.

### MoCov3

CF Score: 67.97. Result ID: 699562d53badfaffe6558512.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6a931e209131cea2903d.md>)

[Implementation](<https://github.com/facebookresearch/moco-v3>)

Recorded evaluation configuration: {"Modality":"Natural","Network":"UNETR","Pre-training Strategy":"With General SSL"}. This record does not assert independent reproduction.

### UNETR

CF Score: 67.55. Result ID: 699562d53badfaffe655850c.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77b91e209131cea74fab.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6afc1e209131cea2b881.md>)

Recorded evaluation configuration: {"Pre-training Strategy":"From Scratch","Network":"UNETR"}. This record does not assert independent reproduction.

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