Biomedical Entity Linking on XL-BEL 1.0 (test) benchmark leaderboard · SOTA2 Research

Biomedical Entity Linking on XL-BEL 1.0 (test)

78.7EN Precision@1SAPBERT

Evaluation Results

Method	Links
SAPBERT2021.05		78.7	81.6	47.3	51.4	22.7	24.7	8.2	10.2	5.8	6	26.4	29.7	2	2.4	1.9	2.2	3	3.2	3.1	3.4	19.9	21.6
SAPBERTall_syn2021.05		78.3	80.7	55.6	61.3	30	34.2	11.8	14.8	9.3	11.3	35.5	39.5	2	2.4	6.4	8.2	6.9	8.3	3	3.3	23.9	26.4
XLMR + SAPall_syn2021.05		78.2	81	56.4	62.7	31.8	37.3	18.6	22.2	35.4	41.2	42.8	48.9	16.7	21.4	18.8	23	24	28.1	20.6	27.5	34.3	39.3
XLMR + SAPen-syn2021.05		78.1	80.9	47.9	53.5	27.6	32	12.2	14.7	21.8	25.9	29.3	35.9	4.5	6.7	7.9	11.3	8.3	11.3	11.5	16.2	24.9	28.8
MBERT + SAPen-syn2021.05		75.5	79.9	50.6	55.8	26	29.6	8.7	10.7	10.1	12.6	31	34.4	2.7	3.2	4.1	5.7	4.7	5.9	3.1	3.5	21.7	24.1
MBERT + SAPall_syn2021.05		75	79.7	61.4	67	33.4	37.8	18.4	21.9	35.1	40.3	44.5	47.7	15.1	17.6	19.5	22.7	19.9	25	2.8	3.4	32.5	36.3
{$LANG}BERT + SAPall_syn2021.05		60.9	66.8	35.5	40	18.8	23.9	36.4	42.4	44.9	49.7	13.5	16	18.5	23.8	21.2	25.9	0.6	0.6	—	—	27.8	32.1
{$LANG}BERT2021.05		41.3	42.5	16.8	18.4	4.9	5.2	1.1	1.6	19.5	21.8	1.1	1.6	2.1	3.2	2.7	2.8	0.4	0.4	—	—	10	10.8
XLMR2021.05		1	2	0.3	0.7	0	0.1	0.1	0.2	0.1	0.2	0.4	0.5	0	0.3	0.1	0.2	0.2	0.4	0	0.1	0.2	0.5
MBERT2021.05		0.8	1.7	0.5	0.7	0.3	0.4	0.4	0.8	0	0	0.7	1.2	0	0	0	0	0	0.1	0	0	0.3	0.5