# Evaluating histopathology transfer learning with ChampKit

Source: [Evaluating histopathology transfer learning with ChampKit](<https://www.sota2.com/research/paper/68fa5f4b1e209131ce9e8c36>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2025-10-27T05:44:10.915Z

Authors: Jakub R. Kaczmarzyk, Tahsin M. Kurc, Shahira Abousamra, Rajarsi Gupta, Joel H. Saltz, Peter K. Koo

Published: 2022-06-14T14:00:17.000Z

## Abstract

Histopathology remains the gold standard for diagnosis of various cancers. Recent advances in computer vision, specifically deep learning, have facilitated the analysis of histopathology images for various tasks, including immune cell detection and microsatellite instability classification. The state-of-the-art for each task often employs base architectures that have been pretrained for image classification on ImageNet. The standard approach to develop classifiers in histopathology tends to focus narrowly on optimizing models for a single task, not considering the aspects of modeling innovations that improve generalization across tasks. Here we present ChampKit (Comprehensive Histopathology Assessment of Model Predictions toolKit): an extensible, fully reproducible benchmarking toolkit that consists of a broad collection of patch-level image classification tasks across different cancers. ChampKit enables a way to systematically document the performance impact of proposed improvements in models and methodology. ChampKit source code and data are freely accessible at https://github.com/kaczmarj/champkit .

## Recorded benchmark results

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

## Original sources and implementation

[Original paper](<https://arxiv.org/abs/2206.06862>)

[PDF](<https://arxiv.org/pdf/2206.06862.pdf>)
