# Move set, algorithm, and folding kinetics of Monte Carlo simulations for lattice polymers

Source: [Move set, algorithm, and folding kinetics of Monte Carlo simulations for lattice polymers](<https://www.sota2.com/research/paper/68fa20507a2b558e29330228>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2025-10-23T21:30:23.143Z

Authors: Yu-Pin Luo, Ming-Chang Huang, Yen-Liang Chou, Tsong-Ming Liaw

Published: 2005-12-13T05:43:46.000Z

## Abstract

The effect of different move sets on the folding kinetics of the Monte Carlo simulations is analysed based on the conformation-network and the temperature-dependent folding kinetics. A new scheme of implementing Metropolis algorithm is given. The new method is shown to satisfy the detailed balance and converge efficiently towards thermal equilibrium. A new quantity, employed from the continuous time Monte Carlo method, is introduced to identify effectively the kinetic traps of foldings.

## Recorded benchmark results

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## Original sources and implementation

[Original paper](<https://arxiv.org/abs/cond-mat/0512263>)

[PDF](<https://arxiv.org/pdf/cond-mat/0512263.pdf>)