# A Generator of Protein Folding Kinetics States for the Diffusion-Collision Model

Source: [A Generator of Protein Folding Kinetics States for the Diffusion-Collision Model](<https://www.sota2.com/research/paper/68fa1faf7a2b558e2932b777>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2025-10-23T19:11:38.360Z

Authors: Zlatko K. Vasilkoski, David L. Weaver

Published: 2000-11-19T06:34:25.000Z

## Abstract

Two separate algorithms for calculating the intermediate states, using cellular automata and the initial conditions in the rate matrix for the diffusion-collision model are introduced. They enable easy and fast calculations of the folding probabilities of the intermediate states, even for a very large number of microdomains.

## Recorded benchmark results

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

## Original sources and implementation

[Original paper](<https://arxiv.org/abs/physics/0011045>)

[PDF](<https://arxiv.org/pdf/physics/0011045.pdf>)